HELP doc_ant.exe HTML 10, : 5-3-401 050031
ANTHEPROT 4.3 ANTHEPROT 4.3 Institute of Biology and Chemistry of Proteins Unix DOS WINDOWS95 98 WINDOWS Anthe4_3c.exe 1.9 Anthewin ANTHEPROT 4.3
ANTHEPROT 4.3 File/Open *.SEQ ANTHEPROT 3.3 DNA/Strider EMBL NBRF Pearson/Fasta PIR IG/Stanford ); *.BAS ( Pearson/Fasta 30 32K ); ClustalV ClustalW *.ALN ClustalW Multalin 4.1 *.MUL Prosite Site *.SIT PDB *.PDB IBCP http://wwww.ibcp.fr/predict.html *.CNS ANTHEPROT *.SEQ Pearson/Fasta >
>MBN VLSEGEWQLVLHVWAKVEADVAGHGQDILIRLFKSHPETLEKFDRFKHLKTEAEMKASEDL KKHGVTVLTALGAILKKKGHHEAELKPLAQSHATKHKIPIKYLEFISEAIIHVLHSRHPGD FGADAQGAMNKALELFRKDIAAKYKELGYQG Undo Ctrl+Z Ctrl+T
Methods
PROSITES Internet Helical Wheel Dot Plot 1. Dot Plot Dot Plot 2
Dot Plot Dot Plot Dot Plot 115 1 114
2. Similarity Search Methods/Similarity Search/WWW or Local Fasta, Methods/Similarity Search/WWW-Blast at PBIL NPS@ server SwissProt 3. Site/signature ANTHEPROT Methods / Site detection (Prosite) PROSITE 100% Mismatch 1 or 2 Similarity level PROSITE 95 2 1054 PROSITE.DAT PROSITE.DOC ANTHEPROT
PROSITE 4. Pattern search Databases/Pattern search PROSITE - - [ ] - { } - x - x(3) 3
N-[PT]-{GM}-x(2)-[ILVM] N-P-K-G-H-V, N-T-L-K-G-M N-L-K-G-H-V, N-T-G-K-H-V Pearson SEQ_x.BAS 5. Antheprot 115 L 5 AIIHVLHSRHP -7 5 Shift+ Hydrophobicity profile
Hydrophilicity profile Solvent accessibility profile Antigenicity profile transmembranous regions profile Combined antigenicity profile 6. Antheprot GOR I Method/Secondary structure prediction/garnier et al Gibrat Method/Secondary structure prediction/gibrat et al Double Prediction Method DPM Method/Secondary structure prediction/dpm Homologue Method/Secondary structure prediction/levin Predator Method/Secondary structure prediction/ Predator Method/Secondary structure prediction/all Ctrl+L
GOR I Gibrat Double Prediction Method DPM
Homologue Predator X *.XRA Pearson/Fasta
*.xra >Myoglobin CCCHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHCHHHHHTCHHHHTCCSHH HHHHCHHHHHHH HHHHHHHHHHHTTTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHH CTTTTSHHHHHH HHHHHHHHHHHHHHHHHHHTCCC H E T C 7. Methods/AA Composition, specific volume, M. Weight Ctrl+M
8. ANTHEPRO4.3 Methods/Titration curve Ctrl+U
9. Helical Wheel ANTHEPRO4.3 Helical Wheel Methods/ Helical Wheel Helical Wheel Helical Wheel
10. ANTHEPRO4.3 Methods/Potential cleavage site of signal pept.
ANTHEPRO4.3 WORD *.BMP Invert Mode Options
ANTHEPRO4.3 ANTHEPRO4.3 ANTHEPRO4.3 ANTHEPRO4.3 ftp://ftp.ibcp.fr/pub/antheprot/windows http:://biosoft.yeah.net Email tanjie@earthling.net