實驗設計分析最佳工具整合性生物資訊平台 金萬林企業股份有限公司 產品專員 李玉琪 Doris http://www.kimforest.com http://www.clcbio.com
CLC Main Workbench 一套軟體多種功能, 滿足客戶多項需求 軟體相容度高, 可處理多種來源的檔案格式 直接連結生物技術資訊中心 (NCBI) 的資料庫, 進行資料的蒐尋與下載 有效提供快速編輯 整合各種 DNA RNA 及 Protein 序列 可以快速進行各種序列的比對與分析
CLC Main Workbench 可以輕鬆設計 Cloning 實驗的方法 快速設計最適合的 Primer 可直接開啟定序圖譜檔案, 輕鬆進行分析 比對 可直接連結 NCBI 進行 DNA RNA Protein 及 SNP 的 BLAST, 有效節省搜尋及比對的時間 可預測 RNA Protein 的二級結構 可快速上手, 有效整理實驗上一連串繁瑣的資料
CLC Main Workbench
Major functions Assembly of sequencing data Primer design Cloning and restriction sites 3D protein view Protein analyses (SignalP, TMHMM, Pfam domain search etc.) Alignments Phylogenetic trees RNA structure prediction RNA secondary structure view Integrated BLAST (local or webbased) GenBank and UniProt search and download Pattern discovery and motif search SNP annotation Sharing of data Automated documentation work flow Wide range of import and export formats
Import formats 30 ACE files, (.ace), contigs Phylip Alignment, (.phy), alignments GCG Alignment, (.msf), alignments Clustal Alignment, (.aln), alignments Newick, (.nwk), trees FASTA, (.fsa/.fasta), sequences GenBank, (.gbk/.gb/.gp), sequences GCG sequence, (.gcg), sequences (only import) PIR (NBRF), (.pir), sequences (only import) Staden, (.sdn), sequences (only import) DNAstrider, (.str/.strider), sequences Swiss-Port, (.swp), protein sequences Lasergene sequence, (.pro), protein sequence (only import) Lasergene sequence, (.seq), nucleotide sequence (only import) Embl, (.embl), nucleotide sequences Nexus, (.nxs/.nexus), sequences, tree, alignments, and sequence lists CLC, (.clc), sequences, trees, alignments, reports Text, (.txt), all data in a textual format CSV, (.csv), tables, each cell separated with semicolons (only export) ABI, (.abi), trace files (only import) AB1, (.ab1), trace files (only import) SCF2, (.scf), trace files (only import) SCF3, (.scf), trace files (only import) Phred, (.phd), trace files (only import) mmcif, (.cif), structure (only import) PDB, (.pdb), structure (only import) BLAST Database, (.phr/.nhr), BLAST database (import) VectorNTI Database, sequences (import of whole database) VectorNTI achieves, (.ma4/.pa4/.da4), sequences (only import) Gene Construction kit, (.gcc), sequences (only import)
Export formats 20 Export Export Graphics CLC (.clc) Protable Network Graphics (.png) COL file (.col) Protable Document Format (.pdf) CT filc (.ct) JPEG (.jpg) DNA Strider files (.str/.strider) Vector Graphics (.svg) Embl (.emb/embl) Tagged Image File Format (.tif) FASTA (.fa/.fsa/.fasta) PostScript (.ps) GenBank (.gbk/.gb/.gp) Encapsulated PostScript (.eps) History PDF (.pdf) Nexus data (.nxs/.nexus) PIR (.pir) RNAML file (.rnaml/.xml) Semicolon-delimited CSV (.csv) Zip file (.zip)
Navigation Area Graphical user interface View Area Tool Box
Graphical user interface 1 Navigation Area 2 Tool Box 3 View Area
Primer design
Primer design
Primer design
Restriction sites analysis
Cloning
Cloning
Translation
Alignment
Phylogenetic trees Algorithm: UPGMA Neighbor Joining
Sequences Analysis
Assemble sequences
Database Search for sequence at NCBI
BLAST Search
SNP Annotation BLAST Search
SNP Annotation BLAST Search
RNA: Predict secondary structure
RNA: Predict secondary structure
Protein: Predict secondary structure
3D protein view
Software objectives To make user-friendly state-of-the-art bioinformatics software To integrate all analyses in one program To make software that works on: To involve users as much as possible CLC bio offers free user-support to all programs CLC bio is very open to user suggestions We provide at least 2 program upgrades a year
CLC Main Workbench 簡單的操作介面單一模式即可執行多種功能 軟體相容度高可處理多種來源的檔案與作業系統 可快速有效地與生物技術資訊中心 (NCBI) 的資料庫連結 可完成實驗資料搜尋 實驗設計及實驗結果分析, 每一步驟的資料均可儲存, 有效進行資料管理
Website Information http://www.kimforest.com/products_info_clc_main.htm Product overviews: http://clcbio.com/index.php?id=1220 Tutorials: http://www.kimforest.com/products_info_clc_main.htm
Thank you for your attention! http://www.kimforest.com http://www.clcbio.com doris@kimforest.com 產品專員李玉琪 Doris 服務電話 :0980-598-172 金萬林企業股份有限公司免付費 :0800009695